Changes in version 1.14.0 - Update to allow matchEnvData and ncToData handle OPenDAP URLs as input - Updating hycomList with new ESPC-D-V02 dataset to cover post-2024 data and also updating all to use OPeNDAP instead of previous slower THREDDS Changes in version 1.13.0 (2026-04-04) - Update to allow fastReadWave to read extensible wav without crashing - Update to read large files in chunks for fastReadWave to avoid unexplained crashes on certain computing platforms Changes in version 1.12.7 (2026-02-05) - Small bug fix for fastReadWave on incomplete wav files to no longer crash just return what it got Changes in version 1.12.6 (2025-06-10) - Small bug fix for addPgEvent not creating millisecond characters properly (character(0) text bug) Changes in version 1.12.5 - pwelch accidentally using too many windows, now correctly stops at the last window that extends past the length of input Changes in version 1.12.4 (2025-02-24) - fastReadWave with header=TRUE was not properly closing file connections - matchEnvData and ncToData were not returning failed files properly when raw=TRUE - Adding window option to pwelch - Allowing downloadEnv, matchEnvData, erddapToEdinfo, and ncToData to work with certain stationary Tabledap datasets (previously only griddap) Changes in version 1.12.3 (2024-12-11) - Adding nc='HYCOM' option to make it easier to specify that you want to (try) to get to HYCOM data from matchEnvData Changes in version 1.12.2 - matchEnvData and ncToData were really slow in some cases, up to 30x faster now in some cases - Merging in fastReadWave C-based wav file reading function. Must faster than current alternatives, based on the not-always-working audio::load.wave but with improvements - Added pwelch apparently Changes in version 1.12.1 (2024-06-10) - Fixing wignerTransform bug introduced in 1.12.0 Changes in version 1.12.0 (2024-05-30) - adding findEchoTimes function and tests for DCLDE workshop Changes in version 1.11.11 - Make a wish! Dropping hoardr dependency because defaults go against CRAN wishes on MacOS Changes in version 1.11.10 - Bug fix where erddapToEdInfo was crashing instead of working through the server list Changes in version 1.11.9 - Minor adjustments to various NC functions for HYCOM project Changes in version 1.11.8 - Added required column error messages for matchEnvData functinos Changes in version 1.11.7 - alpha wasn't working for plotPresGrid single color plots Changes in version 1.11.6 (2023-08-16) - Safer fail case in peakTrough Changes in version 1.11.5 - Allowing for smaller HYCOM download with modification to formatURL - Adding another NetCDF time format check Changes in version 1.11.4 (2023-04-19) - Dealing with NA coordinate values for enviro functions Changes in version 1.11.3 - Fixing readSpecAnno if no rows in anno table - plotPresBar and plotPresGrid added plotTz option to control timezone of output Changes in version 1.11.2 - Added by argument to plotPresGrid that will either overlay colors with an alpha value or split graphs with facet_wrap - Removed data.table dependency and changed viridisLite to scales Changes in version 1.11.1 - Changed plotPresGrid and plotPresBar arguments to be more intuitive. Both now just use bin for the binning, and plotPresBar can be specified as hours/day instead of having to remember which was which. - Updates to ncToData to allow more flexible time specification. Should work with a larger variety of netcdf files with more arbitrary time specs Changes in version 1.11.0 - Added getFigshareInfo function - Dropped stringr dependency (was only using str_trim before) Changes in version 1.10.6 - matchEnvData can now set timeout length with timeout arg - createSSP has new args progress and ... to pass to matchEnvData Changes in version 1.10.5 - Bug fix so that environmental data functions work properly with NA values (they are just not matched, previously would error) - Change to varSelect, ncToData, and matchEnvData to be able to use variable names in var argument to select without interaction Changes in version 1.10.4 (2022-12-19) - Changing downloadEnv timeout time to 120s. Not sure why it was set to 1200 previously, either type or misunderstanding of units? Changes in version 1.10.3 - Updating addPgEvent to work with events that have 0 detections, and also allow for manual setting of start/end times (useful for creating validation events) Changes in version 1.10.2 - Adding some type checks for plotPresBar and plotPresGrid functions Changes in version 1.10.1 - Adding trainSplitPermute function Changes in version 1.10.0 - Adding plotPresBar and plotPresGrid plotting functions Changes in version 1.9.6 - Updating soundtrapQAQC to have option for internal/external battery voltage Changes in version 1.9.5 (2022-10-17) - Fixing as.character(POSIX) errors for r-devel update Changes in version 1.9.4 - Bug fix for bad XML files in soundtrapQAQC Changes in version 1.9.3 - Pull request adding a new time format for ncToData - Adding logic to drop variables with no dimensions in ncToData and also deal with variables that have non-standard dimensions (default behavior is to read all - if you need to do something in particular with it use the raw option) Changes in version 1.9.2 (2022-04-29) - Fixed a bug where error message in matchEnvData could cause R to crash (oh the irony) - ncToData was not behaving well if columns were not Latitude and Longitude - ncToData also bug if some vars had depth and others did not - LEV is lev is Depth Changes in version 1.9.1 - Adding soundtrapQAQC function Changes in version 1.9.0 - Added addPgAnno function to add spectrogram annotations to Pamguard databases - addPgEvent now has a type argument to specify adding Click Detector events vs Detection Grouper events Changes in version 1.8.3 (2022-02-24) - readSpecAnno adjusted to allow for different table names - Added option unique to squishList to try and simplify results to only unique values Changes in version 1.8.2 - Added readSpecAnno function to read Spectrogram_Annotation tables from PAMGuard databases Changes in version 1.8.1 - Updated decimateWavFiles to work with wav files with bit rates different than 16 (bugs in seewave functions do not pass along bit rate properly) - Bug fix in matchEnvData for datasets that had no UTC axis - Changed defaults in matchEnvData and ncToData to only calculate mean, not median and sd - matchEnvData and ncToData have a depth parameter you can use to specify matching depth values to use. This makes it possibly to specify a range of depths to summarise over for a single coordinate (previously only single depth or all) Changes in version 1.8.0 (2022-01-10) - Reworking of enviro functions to make HYCOM datasets easier to use. Will now automatically figure out which ones you need based on dates and partition your data for you - Enviro functions reworked for temporary download to be much faster - no longer does a separate download for every row, will check to estimate download size first and break in to ~20MB chunks at once - Added createSSP function to create soundspeed profiles Changes in version 1.7.1 - Minor changes to smooth out usability of addPgGps Changes in version 1.7.0 (2021-10-08) - Added raytrace function based on MATLAB code by Val Schmidt - Updating matchEnvData and associated functions to work with provided Depth values instead of only being able to return all Depth values if a Z dimension is present - squishList works with matrices - Added readGPXTrack to remove dependency on plotKML::readGPX Changes in version 1.6.12 - wignerTransform plotting now uses option useRaster = TRUE Changes in version 1.6.11 - addPgEvent fixed issue with repeated Lookup codes and added colours Changes in version 1.6.10 - addPgEvent fixed potential issue with reading empty binaries Changes in version 1.6.9 - squishList no longer breaks on data.table objects Changes in version 1.6.8 (2021-03-27) - peakTrough ignores first and last frequencies for possible peaks - addPgEvent and addPgGps added na.rm=TRUE to Id checking logic to avoid issues with NULL id values in current database - Improvements for addPgEvent check for duplicate data Changes in version 1.6.7 - wignerTransform fixed output size to actually be n x t - updateUID progress bar minor bug fix Changes in version 1.6.6 - wignerTransform works with Wave class input - wignerTransform scaled output by length - updateUID bug checking for SR, should crash less with missing data - tests for UID adding plus test data for bad UIDs added Changes in version 1.6.5 (2020-10-28) - Bug fixes for updateUID. Will check for "ClickNo" column first if that is more accurate, and will not update a UID if it is matching based on time and there is more than one match - Changed database testing to work on copied file in tmpdir for CRAN checks Changes in version 1.6.4 - Added updateUID function to try and realign UID mismatches in Pamguard databases between event detections and their corresponding binary files Changes in version 1.6.3 (2020-10-22) - Changed addPgGps to use parse_date_time for date conversions to allow for truncated date formats to be properly parsed because thanks Excel for rounding those dates didn't need to know there were 0 seconds anyway - matchEnvData not propagating progress argument properly Changes in version 1.6.2 - Checks in database adding function to make sure file exists - writeAMWave example resets par() settings to original Changes in version 1.6.1 - Added a NEWS.md file to track changes to the package. - Fixing addPgGps for spot CSVs - Tons of documentation in prep of CRAN - Added files in inst/extdata for testing - Adding lots of unit testing Changes in version 1.6.0 - Whoa, environmental data functions might work fine for crossing the dateline now. - getFittedMap also removed because ggmap package has been orphaned. Changes in version 1.5.0 *Added addPgGps to add GPS data to a Pamguard database Changes in version 1.4.1 - Internal changes to make matchEnvData a generic method so can write methods for non-dataframe sources easier Changes in version 1.4.0 - Added functions for downloading environmental data and matching it to your data. Replaced older verison of formatURL from v 1.3.0 - New exported functions are edinfoToURL, downloadEnv, erddapToEdinfo, varSelect, getEdinfo, ncToData, matchEnvData, browseEdinfo. Updated tutorial to follow later. Changes in version 1.3.1 - bug fix where straightPath was not properly averaging angles. Changed to polar coordinate style averaging, will now handle angles near the 0-360 border properly Changes in version 1.3.0 - added formatURL functions for making ERDDAP downloading URLs automatically Changes in version 1.2.1 - minor change in error handling for peakTrough - writeClickWave can handle vectors for CPS and frequency Changes in version 1.2.0 - writeAMWave function added to create synthetic amplitude modulated waves Changes in version 1.1.0 - addPgEvent function added to add new events to an existing Pamguard database by providing a vector of UIDs Changes in version 1.0.4 - fixed typo that broke wignerTransform Changes in version 1.0.3 - minor change to output of wignerTransform, resizes back to length of original signal Changes in version 1.0.2 - bug fixed in decimateWavFiles when trying to write a folder of files Changes in version 1.0.1 - wignerTransform added