Package: PAMscapes 0.15.3

Taiki Sakai

PAMscapes: Tools for Summarising and Analysing Soundscape Data

A variety of tools relevant to the analysis of marine soundscape data. There are tools for downloading AIS (automatic identification system) data from Marine Cadastre <https://hub.marinecadastre.gov>, connecting AIS data to GPS coordinates, plotting summaries of various soundscape measurements, and downloading relevant environmental variables (wind, swell height) from the National Center for Atmospheric Research data server <https://gdex.ucar.edu/datasets/d084001/>. Most tools were developed to work well with output from 'Triton' software, but can be adapted to work with any similar measurements.

Authors:Taiki Sakai [aut, cre], Anne Simonis [ctb], Shannon Rankin [ctb], Megan McKenna [ctb], Kaitlin Palmer [ctb]

PAMscapes_0.15.3.tar.gz
PAMscapes_0.15.3.zip(r-4.7)PAMscapes_0.15.3.zip(r-4.6)PAMscapes_0.15.3.zip(r-4.5)
PAMscapes_0.15.3.tgz(r-4.6-any)PAMscapes_0.15.3.tgz(r-4.5-any)
PAMscapes_0.15.3.tar.gz(r-4.7-any)PAMscapes_0.15.3.tar.gz(r-4.6-any)
PAMscapes_0.15.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
PAMscapes/json (API)
NEWS

# Install 'PAMscapes' in R:
install.packages('PAMscapes', repos = c('https://taikisan21.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/taikisan21/pamscapes/issues

On CRAN:

Conda:

5.57 score 11 stars 52 scripts 169 downloads 37 exports 111 dependencies

Last updated from:767a8eef42. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK250
source / vignettesOK270
linux-release-x86_64OK260
macos-release-arm64OK153
macos-oldrel-arm64OK114
windows-develOK150
windows-releaseOK166
windows-oldrelOK201
wasm-releaseOK161

Exports:addAISaddAISSummarybinDetectionDatabinSoundscapeDatacheckSoundscapeInputcreateOctaveLeveldownloadMarCadAISevaluateDeploymentevaluateRecordingsformatEffortloadDetectionDataloadMantaNcloadMultiscapeDataloadSoundscapeDatamarkNAmatchDetectionDatamatchGFSmatchSeascapeplotAcousticSceneplotDetectionBoxplotplotHourlyLevelplotLTSAplotPolarDetectionsplotPSDplotQAQCGapplotQAQCLevelplotQAQCTVplotScaledTimeseriesplotTimeseriesprepPSDDatareadLocalAISrunDailyLTSAReviewrunDetectionExplorerrunDetLoadHelperrunQAQCReviewrunSoundscapeExplorersubsetMarCadAIS

Dependencies:askpassbase64encbitbit64blobbslibcachemclassclassIntclicodetoolscommonmarkcpp11crosstalkcrulcurldata.tableDBIdigestdplyrDTe1071evaluatefarverfastmapfftwfontawesomefsfuturefuture.applygenericsgeosphereggplot2globalsgluegtablehighrhoardrhtmltoolshtmlwidgetshttpcodehttpuvhttrisobandjquerylibjsonliteKernSmoothknitrlabelinglaterlazyevallifecyclelistenvlubridatemagrittrMASSmemoisemimenanoparquetncdf4opensslotelPamBinariesPAMmiscparallellypillarpkgconfigpromisesproxypurrrR6rappdirsRColorBrewerRcppRcppRollrerddaprjsonrlangrmarkdownRSQLites2S7sassscalesseewavesfshinysignalsourcetoolsstringistringrsuncalcsystibbletidyrtidyselecttimechangetinytextriebeardtuneRunitsurltoolsutf8vctrsviridisLitewithrwkxfunxml2xtableyaml

Readme and manuals

Help Manual

Help pageTopics
Add AIS Data to DataframeaddAIS
Add AIS Data Summary to DataframeaddAISSummary
Bin Detection Data to Time BinsbinDetectionData
Summarise Soundscape Data by Time BinbinSoundscapeData
Check Proper Formatting for Soundscape InputscheckSoundscapeInput
Create Octave Level MeasurementscreateOctaveLevel
Download AIS Data from Marine CadastredownloadMarCadAIS
Evaluate deployment of recording files for potential problemsevaluateDeployment
Evaluate Recording Files for IssuesevaluateRecordings
Format Detection EffortformatEffort
Load Detection DataloadDetectionData
Load MANTA NetCDF FileloadMantaNc
Load Multiple Folders of Soundscape DataloadMultiscapeData
Load Soundscape DataloadSoundscapeData
Mark NA Values by Time and FrequencymarkNA
Match Detections to Other DatamatchDetectionData
Match GFS Environmental DatamatchGFS
Match Seascape Class to DatamatchSeascape
Plot Acoustic SceneplotAcousticScene
Plot Detection BoxplotplotDetectionBoxplot
Plot Hourly Sound LevelplotHourlyLevel
Plot Long-Term Spectral Average (LTSA)plotLTSA
Plot Detections in a Polar PlotplotPolarDetections
Plot Power Spectral DensityplotPSD prepPSDData
Plot QAQC DataplotQAQCGap plotQAQCLevel plotQAQCTV
Plot Rescaled TimeseriesplotScaledTimeseries
Plot TimeseriesplotTimeseries
Read AIS Data Near GPS TrackreadLocalAIS
Run Daily Soundscape LTSA Data Review Shiny ApprunDailyLTSAReview
Run Detection Data Explorer ApprunDetectionExplorer
Run Detection Data Loading Helper ApprunDetLoadHelper
Run QAQC Review Shiny ApprunQAQCReview
Run Soundscape Explorer ApprunSoundscapeExplorer
Subset Marine Cadastre AIS Data to RegionsubsetMarCadAIS