{ "_id": "6a495f4e77d6db3f2f965ac7", "Package": "PAMmisc", "Title": "Miscellaneous Functions for Passive Acoustic Analysis", "Version": "1.14.0", "Authors@R": "c(\nTS = person(\"Taiki\", \"Sakai\", email = \"taiki.sakai@noaa.gov\", role = c(\"aut\", \"cre\")),\nJB = person(\"Jay\", \"Barlow\", role = c(\"ctb\")),\nJO = person(\"Julie\", \"Oswald\", role = c(\"ctb\")),\nVS = person(\"Val\", \"Schmidt\", role = c(\"ctb\")))", "Description": "A collection of miscellaneous functions for passive\nacoustics. Much of the content here is adapted to R from code\nwritten by other people. If you have any ideas of functions to\nadd, please contact Taiki Sakai.", "License": "GNU General Public License", "Encoding": "UTF-8", "LazyData": "true", "Config/roxygen2/version": "8.0.0", "Config/pak/sysreqs": "libfftw3-dev libsndfile1-dev libxml2-dev\nlibnetcdf-dev libssl-dev", "Repository": "https://taikisan21.r-universe.dev", "Date/Publication": "2026-06-04 21:09:57 UTC", "RemoteUrl": "https://github.com/taikisan21/pammisc", "RemoteRef": "HEAD", "RemoteSha": "9777e06261491a6c0a3d97871749222400b28e69", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-24 10:11:06 UTC", "User": "root" }, "Author": "Taiki Sakai [aut, cre],\nJay Barlow [ctb],\nJulie Oswald [ctb],\nVal Schmidt [ctb]", "Maintainer": "Taiki Sakai ", "_user": "taikisan21", "_type": "src", "_file": "PAMmisc_1.14.0.tar.gz", "_fileid": "https://r2.ropensci.org/878f99037c8bdb25751e7a82c4a5d2fdf5f76b49eb3af05eb9296447ce6f3b08", "_filesize": 607370, "_sha256": "878f99037c8bdb25751e7a82c4a5d2fdf5f76b49eb3af05eb9296447ce6f3b08", "_expires": "2026-10-12T19:30:20.000Z", "_created": "2026-06-24T10:11:06.000Z", "_published": "2026-07-04T19:30:22.575Z", "_jobs": [ { "job": 85160641190, "time": 181, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7846555734" }, { "job": 85160641120, "time": 188, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7846556517" }, { "job": 85160641170, "time": 186, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7846557009" }, { "job": 85160641018, "time": 241, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7846575581" }, { "job": 85160641217, "time": 102, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7846524552" }, { "job": 85160641142, "time": 231, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "7846571554" }, { "job": 85160641145, "time": 127, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7846534387" }, { "job": 85160640970, "time": 353, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7846617849" }, { "job": 85160640740, "time": 197, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7846485511" }, { "job": 85160641128, "time": 145, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7846540763" }, { "job": 85160641154, "time": 164, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7846547865" }, { "job": 85160641137, "time": 120, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7846532406" }, { "job": 85160641109, "time": 124, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7846533483" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/taikisan21/actions/runs/28091050962", "_status": "success", "_upstream": "https://github.com/taikisan21/pammisc", "_commit": { "id": "9777e06261491a6c0a3d97871749222400b28e69", "author": "Taiki Sakai ", "committer": "Taiki Sakai ", "message": "progress was missing from opendap\n", "time": 1780607397 }, "_maintainer": { "name": "Taiki Sakai", "email": "taiki.sakai@noaa.gov", "login": "taiki-sakai", "description": "", "uuid": 186210537 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.50", "role": "Depends" }, { "package": "ggplot2", "role": "Imports" }, { "package": "tuneR", "role": "Imports" }, { "package": "seewave", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "RcppRoll", "role": "Imports" }, { "package": "PamBinaries", "role": "Imports" }, { "package": "RSQLite", "role": "Imports" }, { "package": "lubridate", "role": "Imports" }, { "package": "rerddap", "role": "Imports" }, { "package": "ncdf4", "role": "Imports" }, { "package": "httr", "role": "Imports" }, { "package": "purrr", "role": "Imports" }, { "package": "xml2", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "geosphere", "role": "Imports" }, { "package": "tcltk", "role": "Imports" }, { "package": "scales", "role": "Imports" }, { "package": "suncalc", "role": "Imports" }, { "package": "rjson", "role": "Imports" }, { "package": "fftw", "role": "Imports" }, { "package": "signal", "role": "Imports" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "taikisan21", "_selfowned": true, "_usedby": 3, "_updates": [ { "week": "2025-26", "n": 1 }, { "week": "2025-34", "n": 2 }, { "week": "2026-13", "n": 3 }, { "week": "2026-14", "n": 1 }, { "week": "2026-23", "n": 2 } ], "_tags": [], "_stars": 4, "_contributors": [ { "user": "taikisan21", "count": 160, "uuid": 13296556 }, { "user": "taiki-sakai", "count": 44, "uuid": 186210537 } ], "_userbio": { "uuid": 13296556, "type": "user", "name": "Taiki Sakai", "followers": 30 }, "_downloads": { "count": 689, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PAMmisc" }, "_devurl": "https://github.com/taikisan21/pammisc", "_searchresults": 51, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/PAMmisc.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/taikisan21/pammisc", "_realowner": "taikisan21", "_cranurl": true, "_releases": [ { "version": "1.6.3", "date": "2020-10-22" }, { "version": "1.6.5", "date": "2020-10-28" }, { "version": "1.6.8", "date": "2021-03-27" }, { "version": "1.7.0", "date": "2021-10-08" }, { "version": "1.8.0", "date": "2022-01-11" }, { "version": "1.8.3", "date": "2022-02-24" }, { "version": "1.9.2", "date": "2022-04-29" }, { "version": "1.9.5", "date": "2022-10-18" }, { "version": "1.10.4", "date": "2022-12-20" }, { "version": "1.11.4", "date": "2023-04-19" }, { "version": "1.11.6", "date": "2023-08-17" }, { "version": "1.12.0", "date": "2024-05-30" }, { "version": "1.12.1", "date": "2024-06-10" }, { "version": "1.12.3", "date": "2024-12-11" }, { "version": "1.12.4", "date": "2025-02-24" }, { "version": "1.12.6", "date": "2025-06-11" }, { "version": "1.12.7", "date": "2026-02-05" }, { "version": "1.13.0", "date": "2026-04-04" } ], "_exports": [ "addPgAnno", "addPgEvent", "addPgGps", "browseEdinfo", "createAMWave", "createClickWave", "createSSP", "dataToRanges", "decimateWavFiles", "downloadEnv", "edinfoToURL", "erddapToEdinfo", "fastReadWave", "findEchoTimes", "formatURL", "getEdinfo", "getFigshareInfo", "hycomToEdinfo", "matchEnvData", "ncToData", "opendapToEdinfo", "peakTrough", "plotPresBar", "plotPresGrid", "processSoundtrapLogs", "pwelch", "raytrace", "readGPXTrack", "readSpecAnno", "soundtrapQAQC", "squishList", "straightPath", "trainSplitPermute", "updateUID", "varSelect", "wignerTransform", "writeAMWave", "writeClickWave" ], "_datasets": [ { "name": "erddapList", "title": "A list of edinfo objects from ERDDAP data sources", "object": "erddapList", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "hycomList", "title": "A list of edinfo objects from HYCOM data sources", "object": "hycomList", "class": [ "hycomList", "edinfo", "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "addPgAnno", "title": "Add Spectrogram Annotations to Pamguard Database", "topics": [ "addPgAnno" ] }, { "page": "addPgEvent", "title": "Add Pamguard Event to Database", "topics": [ "addPgEvent" ] }, { "page": "addPgGps", "title": "Add GPS to a Pamguard Database", "topics": [ "addPgGps" ] }, { "page": "browseEdinfo", "title": "Browse a List of Environmental Datasets", "topics": [ "browseEdinfo" ] }, { "page": "createSSP", "title": "Create Sound Speed Profiles", "topics": [ "createSSP" ] }, { "page": "dataToRanges", "title": "Create List of the Ranges of Coordinates", "topics": [ "dataToRanges" ] }, { "page": "decimateWavFiles", "title": "Decimate Wave Files", "topics": [ "decimateWavFiles" ] }, { "page": "downloadEnv", "title": "Download Environmental Data", "topics": [ "downloadEnv" ] }, { "page": "edinfoToURL", "title": "Create a URL for Downloading Data from a edinfo Object", "topics": [ "edinfoToURL" ] }, { "page": "erddapList", "title": "A list of edinfo objects from ERDDAP data sources", "topics": [ "erddapList" ] }, { "page": "erddapToEdinfo", "title": "Create an edinfo Object from an ERDDAP Dataset Id", "topics": [ "erddapToEdinfo", "hycomToEdinfo", "opendapToEdinfo" ] }, { "page": "fastReadWave", "title": "Load Wave File", "topics": [ "fastReadWave" ] }, { "page": "findEchoTimes", "title": "Find Estimated Echo Times", "topics": [ "findEchoTimes" ] }, { "page": "formatURL", "title": "Format URL for Environmental Data Download", "topics": [ "formatURL" ] }, { "page": "getEdinfo", "title": "Browse a List of Curated Environmental Datasets", "topics": [ "getEdinfo" ] }, { "page": "getFigshareInfo", "title": "getFigshareInfo", "topics": [ "getFigshareInfo" ] }, { "page": "hycomList", "title": "A list of edinfo objects from HYCOM data sources", "topics": [ "hycomList" ] }, { "page": "matchEnvData", "title": "Match Data From an Existing Netcdf File or Download and Match", "topics": [ "matchEnvData", "matchEnvData,data.frame-method" ] }, { "page": "ncToData", "title": "Match Data From a Netcdf File", "topics": [ "ncToData" ] }, { "page": "peakTrough", "title": "Find Peaks and Troughs in a Spectrum", "topics": [ "peakTrough" ] }, { "page": "plotPresBar", "title": "plotPresBar", "topics": [ "plotPresBar" ] }, { "page": "plotPresGrid", "title": "plotPresGrid", "topics": [ "plotPresGrid" ] }, { "page": "pwelch", "title": "Estimate Power Spectral Density Using Welch's Method", "topics": [ "pwelch" ] }, { "page": "raytrace", "title": "Raytrace Through a Soundspeed Profile", "topics": [ "raytrace" ] }, { "page": "readGPXTrack", "title": "Read Tracks from a GPX File", "topics": [ "readGPXTrack" ] }, { "page": "readSpecAnno", "title": "Read Pamguard Spectrogram Annotation Table", "topics": [ "readSpecAnno" ] }, { "page": "soundtrapQAQC", "title": "Perform QA/QC on Soundtrap Files", "topics": [ "processSoundtrapLogs", "soundtrapQAQC" ] }, { "page": "squishList", "title": "Compress a List by Name", "topics": [ "squishList" ] }, { "page": "straightPath", "title": "Mark Straight Path Segments in GPS Track", "topics": [ "straightPath" ] }, { "page": "trainSplitPermute", "title": "trainSplitPermute", "topics": [ "trainSplitPermute" ] }, { "page": "updateUID", "title": "Update Detection UIDs", "topics": [ "updateUID" ] }, { "page": "varSelect", "title": "Utility for Selecting Variables to Download", "topics": [ "varSelect" ] }, { "page": "wignerTransform", "title": "Calculate the Wigner-Ville Transform of a Signal", "topics": [ "wignerTransform" ] }, { "page": "writeAMWave", "title": "Write Amplitude Modulated Waveform", "topics": [ "createAMWave", "writeAMWave" ] }, { "page": "writeClickWave", "title": "Write Click Waveform", "topics": [ "createClickWave", "writeClickWave" ] } ], "_readme": "https://github.com/taikisan21/pammisc/raw/HEAD/README.md", "_rundeps": [ "askpass", "bit", "bit64", "blob", "cachem", "cli", "cpp11", "crul", "curl", "data.table", "DBI", "digest", "dplyr", "farver", "fastmap", "fftw", "generics", "geosphere", "ggplot2", "glue", "gtable", "hoardr", "httpcode", "httr", "isoband", "jsonlite", "labeling", "lifecycle", "lubridate", "magrittr", "MASS", "memoise", "mime", "nanoparquet", "ncdf4", "openssl", "PamBinaries", "pillar", "pkgconfig", "purrr", "R6", "rappdirs", "RColorBrewer", "Rcpp", "RcppRoll", "rerddap", "rjson", "rlang", "RSQLite", "S7", "scales", "seewave", "signal", "suncalc", "sys", "tibble", "tidyselect", "timechange", "triebeard", "tuneR", "urltools", "utf8", "vctrs", "viridisLite", "withr", "xml2" ], "_score": 5.661812685537261, "_indexed": true, "_nocasepkg": "pammisc", "_universes": [ "taikisan21", "taiki-sakai" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.14.0", "date": "2026-06-24T10:13:50.000Z", "distro": "resolute", "arch": "aarch64", "commit": "9777e06261491a6c0a3d97871749222400b28e69", "fileid": "https://r2.ropensci.org/1c09b0305d44195c36284d51c62e4671001d6070eed36618b907a6052e39ddc4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/taikisan21/actions/runs/28091050962" }, { "r": "4.7.0", "os": "linux", "version": "1.14.0", "date": "2026-06-24T10:13:37.000Z", "distro": "resolute", "arch": "x86_64", "commit": "9777e06261491a6c0a3d97871749222400b28e69", "fileid": "https://r2.ropensci.org/21345c395c5ca0f7eef2cd6984d173bda3f9c3ce6fdfd31df3964b60d7f2831e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/taikisan21/actions/runs/28091050962" }, { "r": "4.6.0", "os": "linux", "version": "1.14.0", "date": "2026-06-24T10:13:48.000Z", "distro": "resolute", "arch": "aarch64", "commit": "9777e06261491a6c0a3d97871749222400b28e69", "fileid": "https://r2.ropensci.org/533300d41b2c17a92cc550811649fac4e37ca05d7b7b7084285f3ded478d0c9c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/taikisan21/actions/runs/28091050962" }, { "r": "4.6.0", "os": "linux", "version": "1.14.0", "date": "2026-06-24T10:14:26.000Z", "distro": "resolute", "arch": "x86_64", "commit": "9777e06261491a6c0a3d97871749222400b28e69", "fileid": "https://r2.ropensci.org/4e3283d16dcf0d062d309b26907c13595aa593c4ab2d79890a73242d5437a112", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/taikisan21/actions/runs/28091050962" }, { "r": "4.5.3", "os": "mac", "version": "1.14.0", "date": "2026-06-24T10:12:38.000Z", "arch": "aarch64", "commit": "9777e06261491a6c0a3d97871749222400b28e69", "fileid": "https://r2.ropensci.org/a95309d6268dfb8a5df912bc3c91aec943b1e83b63fc84259c9af0e60abae90a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/taikisan21/actions/runs/28091050962" }, { "r": "4.5.3", "os": "mac", "version": "1.14.0", "date": "2026-06-24T10:13:50.000Z", "arch": "x86_64", "commit": "9777e06261491a6c0a3d97871749222400b28e69", "fileid": "https://r2.ropensci.org/09ddfa009c6ed5f90638c2210832798aa8da049ccfbca80d5dfe0e3ed5c3f795", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/taikisan21/actions/runs/28091050962" }, { "r": "4.6.0", "os": "mac", "version": "1.14.0", "date": "2026-06-24T10:12:55.000Z", "arch": "aarch64", "commit": "9777e06261491a6c0a3d97871749222400b28e69", "fileid": "https://r2.ropensci.org/c741610c8be2a47f41261de02a468c33f61efff2e30c7ffdbc307a3383bb1e31", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/taikisan21/actions/runs/28091050962" }, { "r": "4.6.0", "os": "mac", "version": "1.14.0", "date": "2026-06-24T10:15:03.000Z", "arch": "x86_64", "commit": "9777e06261491a6c0a3d97871749222400b28e69", "fileid": "https://r2.ropensci.org/cff8d3eae7d27801dcc94e9a3e863dd18f3201f1334e6f132223139178cd1837", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/taikisan21/actions/runs/28091050962" }, { "r": "4.6.0", "os": "wasm", "version": "1.14.0", "date": "2026-06-24T10:13:57.000Z", "arch": "emscripten", "commit": "9777e06261491a6c0a3d97871749222400b28e69", "fileid": "https://r2.ropensci.org/20a16cdda561ced8d561a2361692db0fe74bee9ef933a034e78937f0e377046d", "status": "success", "buildurl": "https://github.com/r-universe/taikisan21/actions/runs/28091050962" }, { "r": "4.7.0", "os": "win", "version": "1.14.0", "date": "2026-06-24T10:12:54.000Z", "arch": "x86_64", "commit": "9777e06261491a6c0a3d97871749222400b28e69", "fileid": "https://r2.ropensci.org/2088a591408dfc7013282ea19c0193806defcf323812c6861432650af4c84ea3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/taikisan21/actions/runs/28091050962" }, { "r": "4.5.3", "os": "win", "version": "1.14.0", "date": "2026-06-24T10:12:26.000Z", "arch": "x86_64", "commit": "9777e06261491a6c0a3d97871749222400b28e69", "fileid": "https://r2.ropensci.org/09d1579a05a86a6b8fb60c04da4263e3bbc55ac4b34d41177dbeefe2ec30cb3d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/taikisan21/actions/runs/28091050962" }, { "r": "4.6.0", "os": "win", "version": "1.14.0", "date": "2026-06-24T10:12:42.000Z", "arch": "x86_64", "commit": "9777e06261491a6c0a3d97871749222400b28e69", "fileid": "https://r2.ropensci.org/3ba992331fc654b7d17d7bf32fbbd8d21ba654e9c7010e22f06e5a36ede6c240", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/taikisan21/actions/runs/28091050962" } ] }