Package: PAMmisc 1.14.2

Taiki Sakai

PAMmisc: Miscellaneous Functions for Passive Acoustic Analysis

A collection of miscellaneous functions for passive acoustics. Much of the content here is adapted to R from code written by other people. If you have any ideas of functions to add, please contact Taiki Sakai.

Authors:Taiki Sakai [aut, cre], Jay Barlow [ctb], Julie Oswald [ctb], Val Schmidt [ctb]

PAMmisc_1.14.2.tar.gz
PAMmisc_1.14.2.zip(r-4.7-x86_64)PAMmisc_1.14.2.zip(r-4.7-arm64)PAMmisc_1.14.2.zip(r-4.6-x86_64)PAMmisc_1.14.2.zip(r-4.6-arm64)PAMmisc_1.14.2.zip(r-4.5-x86_64)
PAMmisc_1.14.2.tgz(r-4.6-x86_64)PAMmisc_1.14.2.tgz(r-4.6-arm64)PAMmisc_1.14.2.tgz(r-4.5-x86_64)PAMmisc_1.14.2.tgz(r-4.5-arm64)
PAMmisc_1.14.2.tar.gz(r-4.7-arm64)PAMmisc_1.14.2.tar.gz(r-4.7-x86_64)PAMmisc_1.14.2.tar.gz(r-4.6-arm64)PAMmisc_1.14.2.tar.gz(r-4.6-x86_64)
PAMmisc_1.14.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
PAMmisc/json (API)

# Install 'PAMmisc' in R:

install.packages('PAMmisc', repos = c('https://taikisan21.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/taikisan21/pammisc/issues

Datasets:

erddapList - A list of edinfo objects from ERDDAP data sources
hycomList - A list of edinfo objects from HYCOM data sources

On CRAN:

5.80 score 4 stars 3 packages 58 scripts 679 downloads 38 exports 65 dependencies

Last updated from:84872830d8. Checks:15 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	148
linux-devel-x86_64	OK	187
source / vignettes	OK	255
linux-release-arm64	OK	152
linux-release-x86_64	OK	181
macos-release-arm64	OK	127
macos-release-x86_64	OK	290
macos-oldrel-arm64	OK	160
macos-oldrel-x86_64	OK	316
windows-devel-arm64	OK	380
windows-devel-x86_64	OK	163
windows-release-arm64	OK	449
windows-release-x86_64	OK	139
windows-oldrel-x86_64	OK	139
wasm-release	OK	100

Exports:addPgAnno addPgEvent addPgGps browseEdinfo createAMWave createClickWave createSSP dataToRanges decimateWavFiles downloadEnv edinfoToURL erddapToEdinfo fastReadWave findEchoTimes formatURL getEdinfo getFigshareInfo hycomToEdinfo matchEnvData ncToData opendapToEdinfo peakTrough plotPresBar plotPresGrid processSoundtrapLogs pwelch raytrace readGPXTrack readSpecAnno soundtrapQAQC squishList straightPath trainSplitPermute updateUID varSelect wignerTransform writeAMWave writeClickWave

Dependencies:askpass bit bit64 blob cachem cli cpp11 crul curl data.table DBI digest dplyr farver fastmap fftw generics geosphere ggplot2 glue gtable hoardr httpcode httr isoband jsonlite labeling lifecycle lubridate magrittr MASS memoise mime nanoparquet ncdf4 openssl PamBinaries pillar pkgconfig purrr R6 rappdirs RColorBrewer Rcpp rerddap rjson rlang RSQLite S7 scales seewave signal suncalc sys tibble tidyselect timechange triebeard tuneR urltools utf8 vctrs viridisLite withr xml2

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Add Spectrogram Annotations to Pamguard Database	addPgAnno
Add Pamguard Event to Database	addPgEvent
Add GPS to a Pamguard Database	addPgGps
Browse a List of Environmental Datasets	browseEdinfo
Create Sound Speed Profiles	createSSP
Create List of the Ranges of Coordinates	dataToRanges
Decimate Wave Files	decimateWavFiles
Download Environmental Data	downloadEnv
Create a URL for Downloading Data from a edinfo Object	edinfoToURL
A list of edinfo objects from ERDDAP data sources	erddapList
Create an edinfo Object from an ERDDAP Dataset Id	erddapToEdinfo hycomToEdinfo opendapToEdinfo
Load Wave File	fastReadWave
Find Estimated Echo Times	findEchoTimes
Format URL for Environmental Data Download	formatURL
Browse a List of Curated Environmental Datasets	getEdinfo
getFigshareInfo	getFigshareInfo
A list of edinfo objects from HYCOM data sources	hycomList
Match Data From an Existing Netcdf File or Download and Match	matchEnvData matchEnvData,data.frame-method
Match Data From a Netcdf File	ncToData
Find Peaks and Troughs in a Spectrum	peakTrough
plotPresBar	plotPresBar
plotPresGrid	plotPresGrid
Estimate Power Spectral Density Using Welch's Method	pwelch
Raytrace Through a Soundspeed Profile	raytrace
Read Tracks from a GPX File	readGPXTrack
Read Pamguard Spectrogram Annotation Table	readSpecAnno
Perform QA/QC on Soundtrap Files	processSoundtrapLogs soundtrapQAQC
Compress a List by Name	squishList
Mark Straight Path Segments in GPS Track	straightPath
trainSplitPermute	trainSplitPermute
Update Detection UIDs	updateUID
Utility for Selecting Variables to Download	varSelect
Calculate the Wigner-Ville Transform of a Signal	wignerTransform
Write Amplitude Modulated Waveform	createAMWave writeAMWave
Write Click Waveform	createClickWave writeClickWave