Package: PAMmisc 1.12.3

Taiki Sakai

PAMmisc: Miscellaneous Functions for Passive Acoustic Analysis

A collection of miscellaneous functions for passive acoustics. Much of the content here is adapted to R from code written by other people. If you have any ideas of functions to add, please contact Taiki Sakai.

Authors:Taiki Sakai [aut, cre], Jay Barlow [ctb], Julie Oswald [ctb], Val Schmidt [ctb]

PAMmisc_1.12.3.tar.gz
PAMmisc_1.12.3.zip(r-4.5)PAMmisc_1.12.3.zip(r-4.4)PAMmisc_1.12.3.zip(r-4.3)
PAMmisc_1.12.3.tgz(r-4.4-x86_64)PAMmisc_1.12.3.tgz(r-4.4-arm64)PAMmisc_1.12.3.tgz(r-4.3-x86_64)PAMmisc_1.12.3.tgz(r-4.3-arm64)
PAMmisc_1.12.3.tar.gz(r-4.5-noble)PAMmisc_1.12.3.tar.gz(r-4.4-noble)
PAMmisc_1.12.3.tgz(r-4.4-emscripten)PAMmisc_1.12.3.tgz(r-4.3-emscripten)
PAMmisc.pdf |PAMmisc.html✨
PAMmisc/json (API)
NEWS

# Install 'PAMmisc' in R:
install.packages('PAMmisc', repos = c('https://taikisan21.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/taikisan21/pammisc/issues

Datasets:
  • erddapList - A list of edinfo objects from ERDDAP data sources
  • hycomList - A list of edinfo objects from HYCOM data sources

On CRAN:

5.95 score 4 stars 2 packages 41 scripts 467 downloads 37 exports 73 dependencies

Last updated 1 months agofrom:90ccbf0778. Checks:OK: 7 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 15 2024
R-4.5-win-x86_64NOTENov 15 2024
R-4.5-linux-x86_64NOTENov 15 2024
R-4.4-win-x86_64OKNov 15 2024
R-4.4-mac-x86_64OKNov 15 2024
R-4.4-mac-aarch64OKNov 15 2024
R-4.3-win-x86_64OKNov 15 2024
R-4.3-mac-x86_64OKNov 15 2024
R-4.3-mac-aarch64OKNov 15 2024

Exports:addPgAnnoaddPgEventaddPgGpsbrowseEdinfocreateAMWavecreateClickWavecreateSSPdataToRangesdecimateWavFilesdownloadEnvedinfoToURLerddapToEdinfofastReadWavefindEchoTimesformatURLgetEdinfogetFigshareInfohycomToEdinfomatchEnvDatancToDatapeakTroughplotPresBarplotPresGridprocessSoundtrapLogspwelchraytracereadGPXTrackreadSpecAnnosoundtrapQAQCsquishListstraightPathtrainSplitPermuteupdateUIDvarSelectwignerTransformwriteAMWavewriteClickWave

Dependencies:askpassbitbit64blobcachemclicolorspacecpp11crulcurldata.tableDBIdigestdplyrfansifarverfastmapfftwgenericsgeosphereggplot2gluegtablehoardrhttpcodehttrisobandjsonlitelabelinglatticelifecyclelubridatemagrittrMASSMatrixmemoisemgcvmimemunsellncdf4nlmeopensslPamBinariespillarpkgconfigplogrpurrrR6rappdirsRColorBrewerRcppRcppRollrerddaprjsonrlangRSQLitescalesseewavesignalspsuncalcsystibbletidyselecttimechangetriebeardtuneRurltoolsutf8vctrsviridisLitewithrxml2

Readme and manuals

Help Manual

Help pageTopics
Add Spectrogram Annotations to Pamguard DatabaseaddPgAnno
Add Pamguard Event to DatabaseaddPgEvent
Add GPS to a Pamguard DatabaseaddPgGps
Browse a List of Environmental DatasetsbrowseEdinfo
Create Sound Speed ProfilescreateSSP
Create List of the Ranges of CoordinatesdataToRanges
Decimate Wave FilesdecimateWavFiles
Download Environmental DatadownloadEnv
Create a URL for Downloading Data from a edinfo ObjectedinfoToURL
A list of edinfo objects from ERDDAP data sourceserddapList
Create an edinfo Object from an ERDDAP Dataset IderddapToEdinfo hycomToEdinfo
Load Wave FilefastReadWave
Find Estimated Echo TimesfindEchoTimes
Format URL for Environmental Data DownloadformatURL
Browse a List of Curated Environmental DatasetsgetEdinfo
getFigshareInfogetFigshareInfo
A list of edinfo objects from HYCOM data sourceshycomList
Match Data From an Existing Netcdf File or Download and MatchmatchEnvData matchEnvData,data.frame-method
Match Data From a Netcdf FilencToData
Find Peaks and Troughs in a SpectrumpeakTrough
plotPresBarplotPresBar
plotPresGridplotPresGrid
Estimate Power Spectral Density Using Welch's Methodpwelch
Raytrace Through a Soundspeed Profileraytrace
Read Tracks from a GPX FilereadGPXTrack
Read Pamguard Spectrogram Annotation TablereadSpecAnno
Perform QA/QC on Soundtrap FilesprocessSoundtrapLogs soundtrapQAQC
Compress a List by NamesquishList
Mark Straight Path Segments in GPS TrackstraightPath
trainSplitPermutetrainSplitPermute
Update Detection UIDsupdateUID
Utility for Selecting Variables to DownloadvarSelect
Calculate the Wigner-Ville Transform of a SignalwignerTransform
Write Amplitude Modulated WaveformcreateAMWave writeAMWave
Write Click WaveformcreateClickWave writeClickWave